Mercurial > repos > fabio > iwtomics
comparison plotwithscale.xml @ 68:971bb414cc4f draft
Uploaded 20170609
| author | fabio |
|---|---|
| date | Fri, 09 Jun 2017 12:26:43 -0400 |
| parents | 0b07bbe59b14 |
| children | 39e7294c66e1 |
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| 67:05b7f688c247 | 68:971bb414cc4f |
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| 58 2> "${stackerr}" | 58 2> "${stackerr}" |
| 59 --> | 59 --> |
| 60 </command> | 60 </command> |
| 61 | 61 |
| 62 <inputs> | 62 <inputs> |
| 63 <help> | |
| 64 ... | |
| 65 </help> | |
| 66 | |
| 67 <!-- RData --> | 63 <!-- RData --> |
| 68 <param format="rdata" name="rdata" type="data" label="Select IWTomicsData object with test results" help="File created by 'IWTomics Test and Plot'." /> | 64 <param format="rdata" name="rdata" type="data" label="Select IWTomicsData object with test results" help="File created by 'IWTomics Test and Plot'." /> |
| 69 <!-- test IDs --> | 65 <!-- test IDs --> |
| 70 <param format="tabular" name="testids" type="data" label="Select test IDs" help="File created by 'IWTomics Test and Plot'." /> | 66 <param format="tabular" name="testids" type="data" label="Select test IDs" help="File created by 'IWTomics Test and Plot'." /> |
| 71 <!-- feature IDs --> | 67 <!-- feature IDs --> |
| 167 <output name="iwtomicsrespdf" file="output_plotwithscale/iwtomics.plotwithscale.iwtomicstestresults.pdf" compare="sim_size" /> | 163 <output name="iwtomicsrespdf" file="output_plotwithscale/iwtomics.plotwithscale.iwtomicstestresults.pdf" compare="sim_size" /> |
| 168 <output name="iwtomicssumpdf" file="output_plotwithscale/iwtomics.plotwithscale.summaryplot.pdf" compare="sim_size" /> | 164 <output name="iwtomicssumpdf" file="output_plotwithscale/iwtomics.plotwithscale.summaryplot.pdf" compare="sim_size" /> |
| 169 </test> | 165 </test> |
| 170 </tests> | 166 </tests> |
| 171 | 167 |
| 172 <help> | 168 <help><![CDATA[ |
| 173 This tool allows to select the scale for the Interval-Wise Testing results. In particular, it returns the p-value curves | 169 This tool allows to select the scale for the Interval-Wise Testing results. In particular, it returns the p-value curves |
| 174 for the different tests performed at the selected scale, and it creates a graphical representation of the | 170 for the different tests performed at the selected scale, and it creates a graphical representation of the |
| 175 Interval-Wise Testing results and a summary plot (optional) at the selected scale. | 171 Interval-Wise Testing results and a summary plot (optional) at the selected scale. |
| 176 | 172 |
| 177 ----- | 173 ----- |
| 201 | 197 |
| 202 It implements a simplified version of the function *IWTomicsTest*, *plotTest* and *plotSummary* for *IWTomicsData* objects. | 198 It implements a simplified version of the function *IWTomicsTest*, *plotTest* and *plotSummary* for *IWTomicsData* objects. |
| 203 The complete version can be found in the *R/Bioconductor* package *IWTomics* (see vignette_). | 199 The complete version can be found in the *R/Bioconductor* package *IWTomics* (see vignette_). |
| 204 | 200 |
| 205 .. _vignette: https://bioconductor.org/packages/release/bioc/vignettes/IWTomics/inst/doc/IWTomics.pdf | 201 .. _vignette: https://bioconductor.org/packages/release/bioc/vignettes/IWTomics/inst/doc/IWTomics.pdf |
| 206 </help> | 202 ]]></help> |
| 207 | 203 |
| 208 <citations> | 204 <citations> |
| 209 <citation type="bibtex"> | 205 <citation type="bibtex"> |
| 210 @ARTICLE{ | 206 @ARTICLE{ |
| 211 iwt-functional-data, | 207 iwt-functional-data, |