comparison plotwithscale.xml @ 64:bd5ba4648ac0 draft

Uploaded 20170608

63:c3eb6f46884b

  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <stdio>
    <exit_code range="-1" source="both" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." />
    <exit_code range="10" source="both" level="fatal" description="Wrong test ids." />
    <exit_code range="20" source="both" level="fatal" description="Wrong feature ids." />
    <exit_code range="30" source="both" level="fatal" description="Two scale thresholds selected for the same test and feature." />
    <exit_code range="40" source="both" level="fatal" description="Scale threshold too high." />
    <exit_code range="50" source="both" level="fatal" description="Group by 'test' but selected features with different resolution." />
    <exit_code range="60" source="both" level="fatal" description="Summary plot error. Please try again." />
    <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." />
  </stdio>

  <command>
<![CDATA[
    Rscript $__tool_directory__/plotwithscale.R adjustedpvalue="${adjustedpvalue}" iwtomicsrespdf="${iwtomicsrespdf}" iwtomicssumpdf="${iwtomicssumpdf}"

64:bd5ba4648ac0

  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <stdio>
    <exit_code range="-1" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." />
    <exit_code range="10" level="fatal" description="Wrong test ids." />
    <exit_code range="20" level="fatal" description="Wrong feature ids." />
    <exit_code range="30" level="fatal" description="Two scale thresholds selected for the same test and feature." />
    <exit_code range="40" level="fatal" description="Scale threshold too high." />
    <exit_code range="50" level="fatal" description="Group by 'test' but selected features with different resolution." />
    <exit_code range="60" level="fatal" description="Summary plot error. Please try again." />
    <regex match="Error" level="fatal" description="An error has occurred. Please try again." />
  </stdio>

  <command>
<![CDATA[
    Rscript $__tool_directory__/plotwithscale.R adjustedpvalue="${adjustedpvalue}" iwtomicsrespdf="${iwtomicsrespdf}" iwtomicssumpdf="${iwtomicssumpdf}"