Mercurial > repos > fangly > grinder
diff all_fasta.loc.sample @ 5:5ba7c9ac056a
Uploaded
| author | fangly |
|---|---|
| date | Tue, 04 Oct 2011 02:01:58 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/all_fasta.loc.sample Tue Oct 04 02:01:58 2011 -0400 @@ -0,0 +1,15 @@ +#This file lists the locations and dbkeys of all the fasta files +#under the "genome" directory (a directory that contains a directory +#for each build). The script extract_fasta.py will generate the file +#all_fasta.loc. +#IMPORTANT: EACH LINE OF THIS FILE HAS TO BE TAB-DELIMITED! +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, all_fasta.loc could look something like this: +# +#ncbi_refseq_complete_viruses ncbi_refseq_complete_viruses RefSeq complete viruses /path/to/ncbi_refseq_complete_viruses.fna +#ncbi_refseq_complete_microbes ncbi_refseq_complete_microbes RefSeq complete microbes /path/to/ncbi_refseq_complete_microbes.fna +#homo_sapiens_GRCh37 homo_sapiens_GRCh37 Homo sapiens genome /path/to/Homo_sapiens_GRCh37_reference.fna +#gg_named_16S gg_named_16S GreenGenes named 16S strains /path/to/Isolated_named_strains_16S.fna +