view all_fasta.loc.sample @ 7:bac7e652a9aa

Added mate orientation option

#This file lists the locations and dbkeys of all the fasta files
#under the "genome" directory (a directory that contains a directory
#for each build). The script extract_fasta.py will generate the file
#all_fasta.loc.
#IMPORTANT: EACH LINE OF THIS FILE HAS TO BE TAB-DELIMITED!
#
#<unique_build_id>   <dbkey>   <display_name>   <file_path>
#
#So, all_fasta.loc could look something like this:
#
#ncbi_refseq_complete_viruses	ncbi_refseq_complete_viruses	RefSeq complete viruses	/path/to/ncbi_refseq_complete_viruses.fna
#ncbi_refseq_complete_microbes	ncbi_refseq_complete_microbes	RefSeq complete microbes	/path/to/ncbi_refseq_complete_microbes.fna
#homo_sapiens_GRCh37	homo_sapiens_GRCh37	Homo sapiens genome	/path/to/Homo_sapiens_GRCh37_reference.fna
#gg_named_16S	gg_named_16S	GreenGenes named 16S strains	/path/to/Isolated_named_strains_16S.fna