# HG changeset patch # User fangly # Date 1320379139 14400 # Node ID 577e77853e8b8a8bf8e9053e5e940495cb4f4fa1 # Parent 43def9fa33b9a9af18f2ddc8387ed9942ede8573 Fixed a typo diff -r 43def9fa33b9 -r 577e77853e8b grinder.xml --- a/grinder.xml Thu Nov 03 23:44:09 2011 -0400 +++ b/grinder.xml Thu Nov 03 23:58:59 2011 -0400 @@ -410,6 +410,8 @@ Grinder is a program to create random shotgun and amplicon sequence libraries based on reference sequences in a FASTA file. Features include: + * omic support: genomic, metagenomic, transcriptomic, metatranscriptomic, + proteomic and metaproteomic * shotgun library or amplicon library * arbitrary read length distribution and number of reads * simulation of PCR and sequencing errors (chimeras, point mutations, homopolymers) @@ -426,7 +428,7 @@ A variety of FASTA databases containing genes or genomes can be used as input for Grinder, such as the NCBI RefSeq collection (ftp://ftp.ncbi.nih.gov/refseq/release/microbial/), -the GreenGenes 16S rRNA database (http://greengenes.lbl.gov/Download/Sequence_Data/Fasta_data_files/Isolated_named_strains_16S_aligned.fasta), theh uman genome and transcriptome (ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/RefSeqGene/, ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fna.gz), ... +the GreenGenes 16S rRNA database (http://greengenes.lbl.gov/Download/Sequence_Data/Fasta_data_files/Isolated_named_strains_16S_aligned.fasta), the human genome and transcriptome (ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/RefSeqGene/, ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fna.gz), ... These input files can either be provided as a Galaxy dataset, or can be uploaded by Galaxy users in their history.