Mercurial > repos > fcaramia > contra
comparison tool_dependencies.xml @ 15:f4345d10e1ad
Uploaded
author | fcaramia |
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date | Tue, 11 Dec 2012 18:52:28 -0500 |
parents | 2f78991873a4 |
children | c3f5fbc85988 |
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14:2f78991873a4 | 15:f4345d10e1ad |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool_dependency> | 2 <tool_dependency> |
3 <package name="bedtools" version="2.17.0"> | 3 <package name="bedtools" version="2.17.0"> |
4 <install version="1.0"> | 4 <install version="1.0"> |
5 <actions> | 5 <actions> |
6 <action type="download_by_url" target_filename="BEDTools.v2.17.0.tar.gz">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action> | 6 <action type="download_by_url" >http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action> |
7 <action type="shell_command">tar -zxvf BEDTools.v2.17.0.tar.gz </action> | |
8 <action type="shell_command">cd bedtools-2.17.0</action> | |
9 <action type="shell_command">make clean</action> | 7 <action type="shell_command">make clean</action> |
10 <action type="shell_command">make all</action> | 8 <action type="shell_command">make all</action> |
11 <action type="move_directory_files"> | 9 <action type="move_directory_files"> |
12 <source_directory>bin</source_directory> | 10 <source_directory>bin</source_directory> |
13 <destination_directory>$INSTALL_DIR/bin</destination_directory> | 11 <destination_directory>$INSTALL_DIR/bin</destination_directory> |