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comparison tool_dependencies.xml @ 15:f4345d10e1ad

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Uploaded
author fcaramia
date Tue, 11 Dec 2012 18:52:28 -0500
parents 2f78991873a4
children c3f5fbc85988
comparison
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14:2f78991873a4 15:f4345d10e1ad
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="bedtools" version="2.17.0"> 3 <package name="bedtools" version="2.17.0">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url" target_filename="BEDTools.v2.17.0.tar.gz">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action> 6 <action type="download_by_url" >http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
7 <action type="shell_command">tar -zxvf BEDTools.v2.17.0.tar.gz </action>
8 <action type="shell_command">cd bedtools-2.17.0</action>
9 <action type="shell_command">make clean</action> 7 <action type="shell_command">make clean</action>
10 <action type="shell_command">make all</action> 8 <action type="shell_command">make all</action>
11 <action type="move_directory_files"> 9 <action type="move_directory_files">
12 <source_directory>bin</source_directory> 10 <source_directory>bin</source_directory>
13 <destination_directory>$INSTALL_DIR/bin</destination_directory> 11 <destination_directory>$INSTALL_DIR/bin</destination_directory>