view all_fasta.loc.sample @ 4:9a76d500b049

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#This file lists the locations and dbkeys of all the fasta files
#under the "genome" directory (a directory that contains a directory
#for each build). The script extract_fasta.py will generate the file
#all_fasta.loc. This file has the format (white space characters are
#TAB characters):
#
#<unique_build_id>   <dbkey>   <display_name>   <file_path>
#
#So, all_fasta.loc could look something like this:
#
#apiMel3     apiMel3   Honeybee (Apis mellifera): apiMel3     /path/to/genome/apiMel3/apiMel3.fa
#hg19canon   hg19      Human (Homo sapiens): hg19 Canonical   /path/to/genome/hg19/hg19canon.fa
#hg19full    hg19      Human (Homo sapiens): hg19 Full        /path/to/genome/hg19/hg19full.fa
#
#Your all_fasta.loc file should contain an entry for each individual
#fasta file. So there will be multiple fasta files for each build,
#such as with hg19 above.
#