Mercurial > repos > fcaramia > custom_amplicon_alignment

diff alignCustomAmplicon/alignCustomAmplicon_wrapper.xml @ 1:6a1b222df393 draft

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Uploaded
author fcaramia
date Wed, 09 Jan 2013 00:27:53 -0500
parents d32bddcff685
children 413ba6d9cc46
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--- a/alignCustomAmplicon/alignCustomAmplicon_wrapper.xml	Wed Jan 09 00:24:09 2013 -0500
+++ b/alignCustomAmplicon/alignCustomAmplicon_wrapper.xml	Wed Jan 09 00:27:53 2013 -0500
@@ -1,9 +1,11 @@
 <tool id="alignCustomAmplicon" name="Align Custom Amplicon" version="0.0.1">
   <description>align amplicon to reference with primers</description>
-  <requirements><requirement type="package" version="1.56.0">picard</requirement></requirements>
-  <requirements><requirement type="package" version="0.1.18">samtools</requirement></requirements>
-  <requirements><requirement type="package" version="1.3.12">gzip</requirement></requirements>
-  <requirements><requirement type="perl-module" version="0.42">Inline-CPP</requirement></requirements>
+  <requirements>
+  		<requirement type="package" version="1.56.0">picard</requirement>
+		<requirement type="package" version="0.1.18">samtools</requirement>
+		<requirement type="package" version="1.3.12">gzip</requirement>
+  		<requirement type="perl-module" version="0.42">Inline-CPP</requirement>
+  </requirements>
   <command interpreter="perl">
   	alignCustomAmplicon.pl -s -r -p 4 -o $output $refFile.fields.path $read1 $read2 $primers 
   </command>