Mercurial > repos > fcaramia > edger

comparison htseq.xml @ 9:17983775f1b0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author fcaramia
date Mon, 28 Jan 2013 20:12:15 -0500
parents 734516a21b52
children
comparison
equal deleted inserted replaced
8:734516a21b52 9:17983775f1b0
1 <tool id="htseq-count" name="Count reads in features with htseq-count" version="1.0.0"> 1 <tool id="htseq-count" name="Count reads in features with htseq-count" version="1.0.0">
2 <requirements>
3 <requirement type="package" version="0.1.18">samtools</requirement>
4 <requirement type="python library" version="0.5.3p9">htseq</requirement>
5 </requirements>
2 <description> - Create a digital expression matrix by counting reads in features with htseq-count</description> 6 <description> - Create a digital expression matrix by counting reads in features with htseq-count</description>
3 <command interpreter="perl"> 7 <command interpreter="perl">
4 htseq.pl -m $MODE -s $STRANDED -a $MINAQUAL -t $FEATURETYPE -i $IDATTR -g $gff_file -o $output -r $report $REDUCE 8 htseq.pl -m $MODE -s $STRANDED -a $MINAQUAL -t $FEATURETYPE -i $IDATTR -g $gff_file -o $output -r $report $REDUCE
5 ## Inputs. 9 ## Inputs.
6 #for $group in $group_analysis 10 #for $group in $group_analysis