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comparison edgeR.xml @ 6:b6de7e3b8239 draft

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author fcaramia
date Thu, 13 Sep 2012 00:06:26 -0400
parents 6965066838fc
children 3aadcea3347b
comparison
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5:a535c6d80fb0 6:b6de7e3b8239
1 <tool id="edgeR" name="Empirical analysis of digital gene expression data" version="0.0.1"> 1 <tool id="edgeR" name="Empirical analysis of digital gene expression data" version="0.0.1">
2 2 <requirements>
3 <requirement type="R-module">edgeR</requirement>
4 <requirement type="R-module">limma</requirement>
5 </requirements>
3 <command interpreter="perl"> 6 <command interpreter="perl">
4 edgeR.pl -a $analysis_type.analysis -e $html_file.files_path -f $fdr -h $html_file -o $output 7 edgeR.pl -a $analysis_type.analysis -e $html_file.files_path -f $fdr -h $html_file -o $output
5 ## Pairwise comparisons 8 ## Pairwise comparisons
6 #if $analysis_type.analysis == "pw": 9 #if $analysis_type.analysis == "pw":
7 -r $analysis_type.rowsumfilter 10 -r $analysis_type.rowsumfilter