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1 <tool id="jsm_to_vcf" name="Convert JSM to VCF" version="1.0">
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2
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3 <command interpreter="perl">
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4
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5 jsm_to_vcf.pl $input $output
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6
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7 </command>
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8
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9 <inputs>
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10
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11 <param name="input" type="data" format="txt" label="JSM File" optional="false"/>
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12
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13 </inputs>
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14
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15 <outputs>
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16 <data type="data" format="vcf" name="output" label="${tool.name} result on ${on_string}"/>
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17 </outputs>
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18
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19 <help>
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20
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21 .. class:: infomark
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22
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23 **What it does**
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24
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25 Convert Joint SNV Mix output file into standard VCF format, version 4.1
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26
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27
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28 **Input**
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29
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30 Coverage:
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31
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32 JSM output file
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33
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34
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35 </help>
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36 </tool>
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37
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38
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39
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40
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