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view methylation_analysis_bismark/bismark_indices.loc.sample @ 9:5b208d4d89e5 draft

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author fcaramia
date Tue, 04 Dec 2012 20:15:26 -0500
parents d15b4a2e3bdc
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# Genomes have been coverted using bismark_genome_preparation script. Index points to the directory containing the genome and the methylated genome folder

#bismark.hg19.GRCh37.62	hg19	hg19 ensembl GRCh37.62	/galaxy/indexes/human/ensembl_GRCh37.62/bowtie2/illumina/
#bismark.hg19.b37	b37	hg19 1000 genomes b37	/galaxy/indexes/human/g1k_v37/bowtie2/illumina/
#bismark.mm9.NCBIM37.62	 mm9	mm9 ensembl NCBIM37.62	/galaxy/indexes/mouse/ensembl_NCBIM37.62/bowtie2/illumina/
#bismark.dm3.BDGP5.25.62	dm3	dm3 ensembl BDGP5.25.62	/galaxy/indexes/fruitfly/ensembl_BDGP5.25.62/bowtie2/illumina/