Mercurial > repos > fgiacomoni > bank_inhouse
comparison README.txt @ 0:be582bcd6585 draft
Master branch Updating - - Fxx
author | fgiacomoni |
---|---|
date | Thu, 04 Oct 2018 10:37:14 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:be582bcd6585 |
---|---|
1 ## ****** match_mass environnemnt : ****** ## | |
2 # version December 2014 M Landi / M Petera / JF Martin | |
3 | |
4 ## --- PERL compilator / libraries : --- ## | |
5 $ perl -v | |
6 This is perl, v5.10.1 (*) built for x86_64-linux-thread-multi | |
7 -- | |
8 | |
9 # libs CORE PERL : | |
10 use strict ; | |
11 use warnings ; | |
12 use Carp qw (cluck croak carp) ; | |
13 use Data::Dumper ; | |
14 use Getopt::Long ; | |
15 use POSIX ; | |
16 use List::Util qw( min max ); | |
17 use FindBin ; | |
18 | |
19 # libs CPAN PERL : | |
20 use Math::BigFloat; | |
21 use LWP::Simple; | |
22 use LWP::UserAgent; | |
23 use URI::URL; | |
24 use SOAP::Lite; | |
25 use Encode; | |
26 use HTML::Template ; | |
27 use Net::SSL ; | |
28 use Data::Dumper ; | |
29 use REST::Client; | |
30 use JSON; | |
31 | |
32 # libs pfem PERL : libs are now integrated | |
33 use lib::conf qw( :ALL ) ; | |
34 use lib::csv qw( :ALL ) ; | |
35 use lib::json qw( :ALL ) ; | |
36 | |
37 ## --- R bin and Packages : --- ## | |
38 NA | |
39 | |
40 ## --- Binary dependencies --- ## | |
41 Uses a local database : "inhouse.tsv" in some cases | |
42 "create_inhouse_bank.pl" : allows to recreate "inhouse.tsv" | |
43 -- | |
44 | |
45 ## --- Config : --- ## | |
46 Edit the following lines in the config file : conf_pf.ini | |
47 with your personal token used to manage and allow Pforest access / the WS PeakForest url | |
48 PF_GLOBAL_TOKEN | |
49 PF_WS_URL=https://rest.peakforest.org | |
50 PF_REST_QUERY_CLEAN_RANGE=/spectra/lcms/peaks/get-range-clean | |
51 | |
52 -- | |
53 | |
54 ## --- XML HELP PART --- ## | |
55 one image : | |
56 bank_inhouse.png | |
57 -- | |
58 | |
59 ## --- DATASETS --- ## | |
60 No data set ! waiting for galaxy pages | |
61 -- | |
62 | |
63 ## --- ??? COMMENTS ??? --- ## | |
64 Uses a local database : "inhouse.tsv" in some cases | |
65 "create_inhouse_bank.pl" : allows to recreate "inhouse.tsv" | |
66 -- |