Mercurial > repos > fgiacomoni > bank_inhouse
diff README.txt @ 0:be582bcd6585 draft
Master branch Updating - - Fxx
author | fgiacomoni |
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date | Thu, 04 Oct 2018 10:37:14 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.txt Thu Oct 04 10:37:14 2018 -0400 @@ -0,0 +1,66 @@ +## ****** match_mass environnemnt : ****** ## +# version December 2014 M Landi / M Petera / JF Martin + +## --- PERL compilator / libraries : --- ## +$ perl -v +This is perl, v5.10.1 (*) built for x86_64-linux-thread-multi +-- + +# libs CORE PERL : +use strict ; +use warnings ; +use Carp qw (cluck croak carp) ; +use Data::Dumper ; +use Getopt::Long ; +use POSIX ; +use List::Util qw( min max ); +use FindBin ; + +# libs CPAN PERL : +use Math::BigFloat; +use LWP::Simple; +use LWP::UserAgent; +use URI::URL; +use SOAP::Lite; +use Encode; +use HTML::Template ; +use Net::SSL ; +use Data::Dumper ; +use REST::Client; +use JSON; + +# libs pfem PERL : libs are now integrated +use lib::conf qw( :ALL ) ; +use lib::csv qw( :ALL ) ; +use lib::json qw( :ALL ) ; + +## --- R bin and Packages : --- ## +NA + +## --- Binary dependencies --- ## +Uses a local database : "inhouse.tsv" in some cases +"create_inhouse_bank.pl" : allows to recreate "inhouse.tsv" +-- + +## --- Config : --- ## +Edit the following lines in the config file : conf_pf.ini +with your personal token used to manage and allow Pforest access / the WS PeakForest url +PF_GLOBAL_TOKEN +PF_WS_URL=https://rest.peakforest.org +PF_REST_QUERY_CLEAN_RANGE=/spectra/lcms/peaks/get-range-clean + +-- + +## --- XML HELP PART --- ## +one image : +bank_inhouse.png +-- + +## --- DATASETS --- ## +No data set ! waiting for galaxy pages +-- + +## --- ??? COMMENTS ??? --- ## +Uses a local database : "inhouse.tsv" in some cases +"create_inhouse_bank.pl" : allows to recreate "inhouse.tsv" +-- \ No newline at end of file