diff README.txt @ 0:be582bcd6585 draft

Master branch Updating - - Fxx

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+## ****** match_mass environnemnt : ****** ##
+# version December 2014 M Landi / M Petera / JF Martin
+
+## --- PERL compilator / libraries : --- ##
+$ perl -v
+This is perl, v5.10.1 (*) built for x86_64-linux-thread-multi
+--
+
+# libs CORE PERL : 
+use strict ;
+use warnings ;
+use Carp qw (cluck croak carp) ;
+use Data::Dumper ;
+use Getopt::Long ;
+use POSIX ;
+use List::Util qw( min max );
+use FindBin ;
+
+# libs CPAN PERL : 
+use Math::BigFloat;
+use LWP::Simple;
+use LWP::UserAgent;
+use URI::URL;
+use SOAP::Lite;
+use Encode;
+use HTML::Template ;
+use Net::SSL ;
+use Data::Dumper ;
+use REST::Client;	
+use JSON;
+
+# libs pfem PERL : libs are now integrated
+use lib::conf  qw( :ALL ) ;
+use lib::csv  qw( :ALL ) ;
+use lib::json  qw( :ALL ) ;
+
+## --- R bin and Packages : --- ##
+NA
+
+## --- Binary dependencies --- ##
+Uses a local database : "inhouse.tsv" in some cases
+"create_inhouse_bank.pl" : allows to recreate "inhouse.tsv"
+--
+
+## --- Config : --- ##
+Edit the following lines in the config file : conf_pf.ini
+with  your personal token used to manage and allow Pforest access / the WS PeakForest url
+PF_GLOBAL_TOKEN
+PF_WS_URL=https://rest.peakforest.org
+PF_REST_QUERY_CLEAN_RANGE=/spectra/lcms/peaks/get-range-clean
+
+--
+
+## --- XML HELP PART --- ##
+one image : 
+bank_inhouse.png
+--
+
+## --- DATASETS --- ##
+No data set ! waiting for galaxy pages
+--
+
+## --- ??? COMMENTS ??? --- ##
+Uses a local database : "inhouse.tsv" in some cases
+"create_inhouse_bank.pl" : allows to recreate "inhouse.tsv"
+--
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