comparison wsdl_hmdb.pl @ 10:4eb2de7c24d1 draft

Master branch Updating - - Fxx

9:c32280662103

	## get the hmdb server status by a test query - continuous queries or kill script.
	my $status = $oHmdb->test_matches_from_hmdb_ua() ;
	$oHmdb->check_state_from_hmdb_ua($status) ; ## can kill the script execution

	foreach my $mzs ( @{$submasses} ) {
		print Dumper $mzs ;
		my $result = undef ;
		my ( $hmdb_masses, $nb_masses_to_submit ) = $oHmdb->prepare_multi_masses_query($mzs) ;
		$hmdb_pages = $oHmdb->get_matches_from_hmdb_ua($hmdb_masses, $delta, $molecular_species) ;
		($result) = $oHmdb->parse_hmdb_csv_results($hmdb_pages, $mzs, $max_query) ; ## hash format result
		## This previous step return results with cutoff on the number of entries returned ! 

#	$hmdb_ids->{'HMDB03125'} = 1 ,
	$metabocard_features = $oHmdb->get_hmdb_metabocard_from_id($hmdb_ids, $CONF->{'HMDB_METABOCARD_URL'}) ; ## Try to multithread the querying
	
	## Map metabocards with results (add supplementary data)
	
	print Dumper $results ;
	print Dumper $hmdb_ids ;
	print Dumper $metabocard_features ;

	if ( ( defined $results ) and ( defined $metabocard_features ) ) {
		$results = $oHmdb->map_suppl_data_on_hmdb_results($results, $metabocard_features) ;
	}

10:4eb2de7c24d1

	## get the hmdb server status by a test query - continuous queries or kill script.
	my $status = $oHmdb->test_matches_from_hmdb_ua() ;
	$oHmdb->check_state_from_hmdb_ua($status) ; ## can kill the script execution

	foreach my $mzs ( @{$submasses} ) {
#		print Dumper $mzs ;
		my $result = undef ;
		my ( $hmdb_masses, $nb_masses_to_submit ) = $oHmdb->prepare_multi_masses_query($mzs) ;
		$hmdb_pages = $oHmdb->get_matches_from_hmdb_ua($hmdb_masses, $delta, $molecular_species) ;
		($result) = $oHmdb->parse_hmdb_csv_results($hmdb_pages, $mzs, $max_query) ; ## hash format result
		## This previous step return results with cutoff on the number of entries returned ! 

#	$hmdb_ids->{'HMDB03125'} = 1 ,
	$metabocard_features = $oHmdb->get_hmdb_metabocard_from_id($hmdb_ids, $CONF->{'HMDB_METABOCARD_URL'}) ; ## Try to multithread the querying
	
	## Map metabocards with results (add supplementary data)
	
#	print Dumper $results ;
#	print Dumper $hmdb_ids ;
#	print Dumper $metabocard_features ;

	if ( ( defined $results ) and ( defined $metabocard_features ) ) {
		$results = $oHmdb->map_suppl_data_on_hmdb_results($results, $metabocard_features) ;
	}