comparison wsdl_hmdb.pl @ 4:6091a80df951 draft

planemo upload commit e2dfb6f7afeeb7767ef83e9e2c3a2d3e6a94ae98

3:505956db90c5

sub help {
	print STDERR "
help of wsdl_hmdb

# wsdl_hmdb is a script to query HMDB website using mz and return a list of candidates sent by HMDB based on the ms search tool.
# Input : formula or list of formula
# Author : Franck Giacomoni and Marion Landi
# Email : fgiacomoni\@clermont.inra.fr
# Version : 1.4
# Created : 08/07/2012
# Updated : 21/01/2016
USAGE :		 
		wsdl_hmdb.pl 	-mass [one mass or a string list of exact masses] -delta [mz delta] -mode [molecular species: positive|negative|neutral] -output [output tabular file] -view [output html file] 
		
		or 
		wsdl_hmdb.pl 	-masses [an input file of mzs] -colfactor [col of mz] -header_choice [yes|no] -nblineheader [nb of lines containing file header : 0-n]

=back

=head1 AUTHOR

Franck Giacomoni E<lt>[e-mail]<gt>

=head1 LICENSE

This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

version 1.3 : 19 / 11 / 2014

version 1.4 : 21 / 01 / 2016 - a clean version for community

=cut

4:6091a80df951

sub help {
	print STDERR "
help of wsdl_hmdb

# wsdl_hmdb is a script to query HMDB website using mz and return a list of candidates sent by HMDB based on the ms search tool.
# Input : accurate mz or list of accurate masses
# Author : Franck Giacomoni and Marion Landi
# Email : fgiacomoni\@inra.fr
# Version : 1.5
# Created : 08/07/2012
# Updated : 19/01/2018
USAGE :		 
		wsdl_hmdb.pl 	-mass [one mass or a string list of exact masses] -delta [mz delta] -mode [molecular species: positive|negative|neutral] -output [output tabular file] -view [output html file] 
		
		or 
		wsdl_hmdb.pl 	-masses [an input file of mzs] -colfactor [col of mz] -header_choice [yes|no] -nblineheader [nb of lines containing file header : 0-n]

=back

=head1 AUTHOR

Franck Giacomoni E<lt>[e-mail]<gt>

=head1 LICENSE

This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

version 1.3 : 19 / 11 / 2014

version 1.4 : 21 / 01 / 2016 - a clean version for community

version 1.5 : 19 / 01 / 2018 - modifiy parser to match HMDB V4.0 formats

=cut