comparison Dockerfile @ 25:8f7546d0b925 draft

master branch Updating with tag :CI_COMMIT_TAG - - Fxx

24:d8e2ede293a6

# ref install: ubuntu 20.04
FROM ubuntu:20.04

# init var
ARG DEBIAN_FRONTEND=noninteractive

# set author
MAINTAINER Franck Giacomoni <franck.giacomoni.fr>

### 
### [CONTAINER CORE FUNCTIONS]: 
###   xxxx
###   xxxx
### [NOTES] 
###   xxxx

ENV PATH /opt/conda/bin:$PATH

RUN apt-get -y update &&\
    apt-get -y install build-essential \
        cpanminus \
        gzip \
        wget \
        bzip2 \
        ca-certificates \
        libglib2.0-0  \
        libxext6  \
        libsm6  \
        libxrender1 \
        libtext-csv-perl \
        libxml-twig-perl \
        libfile-share-perl

RUN wget --quiet https://repo.anaconda.com/archive/Anaconda3-5.3.0-Linux-x86_64.sh -O ~/anaconda.sh && \
    /bin/bash ~/anaconda.sh -b -p /opt/conda && \
    rm ~/anaconda.sh && \
    ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
    echo "conda activate base" >> ~/.bashrc

RUN cpan install ExtUtils::MakeMaker && \
    cpan install File::ShareDir::Install && \
    cpan install Module::Release && \
    cpan install Archive::Zip && \
    apt -y install git &&\
    apt -y install python3 python3-pip && \
    apt -y install virtualenv && \
    pip install "pip>=7" && \
    pip install -U git+git://github.com/galaxyproject/planemo.git && \
    apt-get autoremove -y && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

25:8f7546d0b925

#FROM pfem/perlfull
FROM python:3.8-buster

# set author
LABEL maintainer="[e-mail]"

ENV PLANEMO_VENV_LOCATION /planemo-venv
ENV CONDA /tmp/conda


RUN apt-get update &&\
    apt-get upgrade -y &&\
    apt-get install --no-install-recommends --yes build-essential \
    	git \
        libgl1-mesa-glx \
        libegl1-mesa \
        libxrandr2 \
        libxss1 \
        libxcursor1 \
        libxcomposite1 \
        libasound2 \
        libxi6 \
        libxtst6 \
        python-virtualenv && \
    pip install virtualenv && \
    python3 -m virtualenv "$PLANEMO_VENV_LOCATION" && \
    . "$PLANEMO_VENV_LOCATION"/bin/activate && \
    pip install --upgrade pip setuptools && \
    pip install planemo numpy && \
    pip install -U planemo && \
    #planemo conda_init --conda_prefix "$CONDA" && \
    apt-get autoremove -y && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/*  && \
    rm -rf /tmp/*  && \
    rm -rf /var/tmp/*  && \
    rm -rf /usr/bin/X11 ;
    
CMD []