Mercurial > repos > fgiacomoni > hmdb_ms_search
comparison wsdl_hmdb.xml @ 15:beb9619263b0 draft
Master branch Updating - - Fxx
| author | fgiacomoni |
|---|---|
| date | Wed, 16 Jan 2019 10:18:18 -0500 |
| parents | 625fa968d99a |
| children | ec7c05889e67 |
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| 14:625fa968d99a | 15:beb9619263b0 |
|---|---|
| 32 #else: | 32 #else: |
| 33 -mass "${input_type.mass}" | 33 -mass "${input_type.mass}" |
| 34 -output_tabular "$variableMetadata2" -output_html "$HmdbOutWeb2" -output_xls "$HmdbOutXlsx2" | 34 -output_tabular "$variableMetadata2" -output_html "$HmdbOutWeb2" -output_xls "$HmdbOutXlsx2" |
| 35 #end if | 35 #end if |
| 36 -delta "$delta" -mode "$mode" -maxquery "$maxquery" | 36 -delta "$delta" -mode "$mode" -maxquery "$maxquery" |
| 37 -advancedFeatures "$advancedFeatures" | |
| 38 -verbose "$verbose" | |
| 37 | 39 |
| 38 ]]></command> | 40 ]]></command> |
| 39 <inputs> | 41 <inputs> |
| 40 <conditional name="input_type"> | 42 <conditional name="input_type"> |
| 41 <param name="choice" type="select" label="Would you use a file " help="if 'NO' is selected then one or more mass(es) must be entered manually"> | 43 <param name="choice" type="select" label="Would you use a file " help="if 'NO' is selected then one or more mass(es) must be entered manually"> |
| 65 <param name="maxquery" label="Number of maximum entries returned by the query " type="integer" value="20" min="1" max="50" size="10" help="Default value is 20 for each queried mz / max is 50"/> | 67 <param name="maxquery" label="Number of maximum entries returned by the query " type="integer" value="20" min="1" max="50" size="10" help="Default value is 20 for each queried mz / max is 50"/> |
| 66 <param name="mode" label="Molecular Species " type="select" display="radio" help=""> | 68 <param name="mode" label="Molecular Species " type="select" display="radio" help=""> |
| 67 <option value="positive">Positif Mode</option> | 69 <option value="positive">Positif Mode</option> |
| 68 <option value="negative">Negatif Mode</option> | 70 <option value="negative">Negatif Mode</option> |
| 69 <option value="neutral" selected="True">Neutral Mass</option> | 71 <option value="neutral" selected="True">Neutral Mass</option> |
| 72 </param> | |
| 73 <param name="advancedFeatures" label="Performing advanced annotation " type="select" display="radio" help="Getting more information from HMDB (Inchi, logP, ...) but increase time of tool execution"> | |
| 74 <option value="1">Advanced mode</option> | |
| 75 <option value="0" selected="True">Default mode</option> | |
| 76 </param> | |
| 77 <param name="verbose" type="select" label="Verbose level" display="radio" help=""> | |
| 78 <option value="1" selected="true">Low</option> | |
| 79 <option value="3" >High</option> | |
| 70 </param> | 80 </param> |
| 71 </inputs> | 81 </inputs> |
| 72 | 82 |
| 73 <outputs> | 83 <outputs> |
| 74 <data name="variableMetadata" format="tabular" label="${input_type.masses.name[:-6]}.HMDB.tabular"> | 84 <data name="variableMetadata" format="tabular" label="${input_type.masses.name[:-6]}.HMDB.tabular"> |