comparison wsdl_hmdb.xml @ 24:d8e2ede293a6 draft

Prod branch Updating with v.:CI_COMMIT_TAG- - Fxx

23:2d8a310e86ce

<tool id="wsdl_hmdb" name="HMDB MS search" version="1.7.0">
  <description>
        search by masses on HMDB online LCMS bank
  </description>
  
  <requirements>
      <requirement type="package" version="2.161">perl-data-dumper</requirement>
      <requirement type="package" version="2.97">perl-html-template</requirement>

            -header_choice "${input_type.header.header_choice}"
            #if str($input_type.header.header_choice) == "yes":
                -nblineheader "${$input_type.header.nbHeader}"
            #end if
            -colfactor "${input_type.colfactor}"
            -output_tabular "$variableMetadata" -output_html "$HmdbOutWeb" -output_xls "$HmdbOutXlsx"
        #else:
            -mass "${input_type.mass}"
            -output_tabular "$variableMetadata2" -output_html "$HmdbOutWeb2" -output_xls "$HmdbOutXlsx2"
        #end if
        
        -mode "${mode_type.mode}"
        
        #if str($mode_type.mode) == "positive":

 | Format Data For Postprocessing
 | Perform LCMS Annotations

.. class:: warningmark

And their "W4M courses 2021":
 | Using Galaxy4Metabolomics - W4M table format for Galaxy
 | Annotation Banks - Annotation  
	

	]]></help>

24:d8e2ede293a6

<tool id="wsdl_hmdb" name="HMDB MS search" version="1.7.1">
  <description>
        search by masses on HMDB v5 online LCMS bank
  </description>
  
  <requirements>
      <requirement type="package" version="2.161">perl-data-dumper</requirement>
      <requirement type="package" version="2.97">perl-html-template</requirement>

            -header_choice "${input_type.header.header_choice}"
            #if str($input_type.header.header_choice) == "yes":
                -nblineheader "${$input_type.header.nbHeader}"
            #end if
            -colfactor "${input_type.colfactor}"
            -output_tabular "$variableMetadata" -output_html "$HmdbOutWeb" -output_xlsx "$HmdbOutXlsx"
        #else:
            -mass "${input_type.mass}"
            -output_tabular "$variableMetadata2" -output_html "$HmdbOutWeb2" -output_xlsx "$HmdbOutXlsx2"
        #end if
        
        -mode "${mode_type.mode}"
        
        #if str($mode_type.mode) == "positive":

 | Format Data For Postprocessing
 | Perform LCMS Annotations

.. class:: warningmark

And their "W4M courses 2022":
 | Using Galaxy4Metabolomics - W4M table format for Galaxy
 | Annotation Banks - Annotation  
	

	]]></help>