diff wsdl_hmdb.xml @ 14:625fa968d99a draft

Master branch Updating - - Fxx

--- a/wsdl_hmdb.xml	Tue Oct 02 04:59:13 2018 -0400
+++ b/wsdl_hmdb.xml	Thu Jan 10 09:10:14 2019 -0500
@@ -1,6 +1,6 @@
 <tool id="wsdl_hmdb" name="HMDB MS search" version="2018-10-01">
   <description>
-        search by masses on HMDB online bank
+        search by masses on HMDB online LCMS bank
   </description>
   
   <requirements>
@@ -92,9 +92,9 @@
   </outputs>
   
   <tests>
-<!-- 
+	<!--test 01 no result - fake-mzrt-input-with-id -->
+  	<!--
   	<test>
-  		<!~~test 01 no result - fake-mzrt-input-with-id ~~>
   		<param name="choice" value="YES"/>
   		<param name="masses" value="input_test01_fake-mzrt-input-with-id.tabular"/>
   		<param name="header_choice" value="yes"/>
@@ -107,8 +107,10 @@
   		<output name="HmdbOutWeb" file="out_test01.html"/>
   		<output name="HmdbOutXlsx" file="out_test01.txt"/>
   	</test>
+  	-->
+  	<!--test 02 : some results - with-mzrt-input-with-id file-->
+  	<!--
   	<test>
-  		<!~~test 02 : some results - with-mzrt-input-with-id file~~>
   		<param name="choice" value="YES"/>
   		<param name="masses" value="input_test02_mzrt-input-with-id.tabular"/>
   		<param name="header_choice" value="yes"/>
@@ -121,9 +123,9 @@
   		<output name="HmdbOutWeb" file="out_test02.html"/>
   		<output name="HmdbOutXlsx" file="out_test02.txt"/>
   	</test>
- -->
+ 	-->
+ 	<!--test 03 : some results - with-mz list in manual mass mode-->
   	<test>
-  		<!--test 03 : some results - with-mz list in manual mass mode-->
   		<param name="choice" value="NO"/>
   		<param name="mass" value="175.01 238.19 420.16 780.32 956.25 1100.45"/>
   		<param name="delta" value="0.05"/>
@@ -147,6 +149,7 @@
 
 **Please cite** If you use this tool, please add the following reference
   | Wishart DS, Jewison T, Guo AC, Wilson M, Knox C, et al., HMDB 3.0 — The Human Metabolome Database in 2013. Nucleic Acids Res. 2013.
+  | Wishart DS, Feunang YD, Marcu A, Guo AC, Liang K, et al., HMDB 4.0 — The Human Metabolome Database for 2018. Nucleic Acids Res. 2018.
 
 
 ---------------------------------------------------
@@ -271,7 +274,7 @@
 
 .. class:: warningmark
 
-And their "W4M courses 2015":
+And their "W4M courses 2018":
  | Using Galaxy4Metabolomics - W4M table format for Galaxy
  | Annotation Banks - Annotation  
 	
@@ -280,5 +283,6 @@
 	<!-- [RECOMMANDED] All citations associated to this tool (main citation given above and other references). Can be extracted from the history panel -->
   <citations>
     <citation type="doi">10.1093/nar/gks1065</citation>
+    <citation type="doi">10.1093/nar/gkx1089</citation>
   </citations>
 </tool>
\ No newline at end of file