# HG changeset patch
# User fgiacomoni
# Date 1516487811 18000
# Node ID 97788e4bf3fc386674f46be37c128063880108e1
# Parent  ecf8e43aceda9859307c563060be92ab1b5b8f19
planemo upload commit d1a5cd8f1baf00879ffa44649883f91c64f43392-dirty

diff -r ecf8e43aceda -r 97788e4bf3fc conf_hmdb.cfg
--- a/conf_hmdb.cfg	Fri Jan 19 10:27:38 2018 -0500
+++ b/conf_hmdb.cfg	Sat Jan 20 17:36:51 2018 -0500
@@ -5,7 +5,7 @@
 #
 ## ARGVT
 # Hmdb limits per job (max is 700)
-HMDB_LIMITS=500
+HMDB_LIMITS=200
 ## Maximum query filtered (default is 20 - min : 1 / max 50)
 HMDB_MAX_QUERY=20
 ## Galaxy url for HTML JS and CSS path 
diff -r ecf8e43aceda -r 97788e4bf3fc lib/hmdb.pm
--- a/lib/hmdb.pm	Fri Jan 19 10:27:38 2018 -0500
+++ b/lib/hmdb.pm	Sat Jan 20 17:36:51 2018 -0500
@@ -223,9 +223,9 @@
     
     my @page = () ;
 
-	my $ua = new LWP::UserAgent;
+	my $ua = LWP::UserAgent->new( keep_alive => 10 );
 	$ua->agent("Mozilla/5.0 (Windows NT 6.1) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/34.0.1847.131 Safari/537.36");
-	$ua->timeout(500);
+	$ua->timeout(240);
 	 
 	my $req = HTTP::Request->new(
 	    POST => 'http://specdb.wishartlab.com/ms/search.csv');
diff -r ecf8e43aceda -r 97788e4bf3fc wsdl_hmdb.pl
--- a/wsdl_hmdb.pl	Fri Jan 19 10:27:38 2018 -0500
+++ b/wsdl_hmdb.pl	Sat Jan 20 17:36:51 2018 -0500
@@ -123,7 +123,7 @@
 	$oHmdb->check_state_from_hmdb_ua($status) ; ## can kill the script execution
 
 	foreach my $mzs ( @{$submasses} ) {
-		
+		print Dumper $mzs ;
 		my $result = undef ;
 		my ( $hmdb_masses, $nb_masses_to_submit ) = $oHmdb->prepare_multi_masses_query($mzs) ;
 		$hmdb_pages = $oHmdb->get_matches_from_hmdb_ua($hmdb_masses, $delta, $molecular_species) ;
@@ -139,9 +139,9 @@
 	
 	## Map metabocards with results (add supplementary data)
 	
-#	print Dumper $results ;
-#	print Dumper $hmdb_ids ;
-#	print Dumper $metabocard_features ;
+	print Dumper $results ;
+	print Dumper $hmdb_ids ;
+	print Dumper $metabocard_features ;
 
 	if ( ( defined $results ) and ( defined $metabocard_features ) ) {
 		$results = $oHmdb->map_suppl_data_on_hmdb_results($results, $metabocard_features) ;