diff wsdl_lipidmaps.xml @ 2:1276908e8fc4 draft

Master branch Updating - - Fxx

--- a/wsdl_lipidmaps.xml	Tue Apr 11 04:09:58 2017 -0400
+++ b/wsdl_lipidmaps.xml	Mon Aug 20 09:17:05 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="lipidmaps" name="Lipidmaps " version="2016-09-27">
+<tool id="lipidmaps" name="Lipidmaps " version="2018-08-20">
 	<description> 
 		 : search on LIPID MAPS Structure Database (LMSD) online with masses and its Text/Ontology-based search engine.
 	</description>
@@ -31,7 +31,7 @@
 			-listneutralloss ${data_type.neutral_loss} -listoxidation ${data_type.oxidation}
 		#end if
 		
-		-output $variableMetadata_out -view $LMSDOutWeb
+		-output $variableMetadata_out -view $LMSDOutWeb -summary $LMSDOutSum
 		
 	]]></command>
 	<inputs>
@@ -1641,6 +1641,7 @@
 	<outputs>
 		<data name="variableMetadata_out" format="tabular"  label="${file_input.name[:-6]}.LMSD.tabular"/>
 		<data name="LMSDOutWeb" format="html"  label="${file_input.name[:-6]}.LMSD_WEB.html"/>
+		<data name="LMSDOutSum" format="tabular"  label="${file_input.name[:-6]}.LMSD_SUM.tabular"/>
 	</outputs>
 	<tests>
   	<test>
@@ -1658,6 +1659,7 @@
   		<param name="filter_subclass" value="NA_306"/>
   		<output name="variableMetadata_out" file="out_test01.tabular"/>
   		<output name="LMSDOutWeb" file="out_test01.html"/>
+  		<output name="LMSDOutSum" file="out_sum_test01.tabular"/>
   	</test>
   	<test>
   		<!--test 02 : some results - input02_480_several_class.csv file-->
@@ -1672,6 +1674,7 @@
   		<param name="col_classif_id" value="3"/>
   		<output name="variableMetadata_out" file="out_test02.tabular"/>
   		<output name="LMSDOutWeb" file="out_test02.html"/>
+  		<output name="LMSDOutSum" file="out_sum_test02.tabular"/>
   	</test>
   	<test>
   		<!--test 03 : some results - input03_200_without_class_on_maincl_301.csv file-->
@@ -1688,6 +1691,7 @@
   		<param name="round_type" value="round"/>
   		<output name="variableMetadata_out" file="out_test03.tabular"/>
   		<output name="LMSDOutWeb" file="out_test03.html"/>
+  		<output name="LMSDOutSum" file="out_sum_test03.tabular"/>
   	</test>
   	<test>
   		<!--test 04 some results and mz transfo with the mode - input01_50_without_class.csv -->
@@ -1704,6 +1708,7 @@
   		<param name="filter_subclass" value="NA_306"/>
   		<output name="variableMetadata_out" file="out_test04.tabular"/>
   		<output name="LMSDOutWeb" file="out_test04.html"/>
+  		<output name="LMSDOutSum" file="out_sum_test04.tabular"/>
   	</test>
   </tests>
 	  <help><![CDATA[
@@ -1817,6 +1822,7 @@
 
 	| LMSD_WEB.html: for viewing result via HTML.
 	| LMSD.tabular: for linking with others modules.
+	| LMSD_SUM.tabular: for summary result by cluster - NEW.
 
 	
 ---------------