diff README.md @ 0:e8bd49794291 draft

Init repository with last lipidmaps_textsearch master version
author fgiacomoni
date Tue, 11 Apr 2017 03:47:06 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.md	Tue Apr 11 03:47:06 2017 -0400
@@ -0,0 +1,52 @@
+LipidMaps - Search on LM online with masses.
+============================================
+
+[![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [![Build Status](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps)
+
+Our project
+-----------
+The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
+
+
+LipidMaps - Search on LM online with masses.
+--------------------------------------------
+
+Tool using the [LIPID MAPS Structure Database](http://www.lipidmaps.org/data/structure/index.html) or LMSD,  and its Text/Ontology-based search engine.
+
+
+Galaxy
+------
+Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. 
+
+Homepage: [https://galaxyproject.org/](https://galaxyproject.org/)
+
+
+Dependencies using Conda
+------------------------
+[![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io)
+
+
+[Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages.
+
+```
+#To install miniconda2
+#http://conda.pydata.org/miniconda.html
+#To install the tool dependencies using conda:
+conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template
+#To set an environment:
+conda create -n wrapper-bank-massbank-spectrum_search perl-soap-lite perl-list-moreutils perl-json perl-html-template`
+#To activate the environment:
+. activate wrapper-bank-massbank-spectrum_search
+```
+
+
+Travis
+------
+[![Build Status](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps)
+
+Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
+
+Historic contributors
+---------------------
+- Franck Giacomoni @fgiacomoni - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)
+- Marion Landi - [LIFEGRID grant](http://www.lifegrid.fr/fr/home/le-pra-lifegrid.html) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)