Mercurial > repos > fgiacomoni > lipidmaps_textsearch
diff README.md @ 0:e8bd49794291 draft
Init repository with last lipidmaps_textsearch master version
author | fgiacomoni |
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date | Tue, 11 Apr 2017 03:47:06 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Tue Apr 11 03:47:06 2017 -0400 @@ -0,0 +1,52 @@ +LipidMaps - Search on LM online with masses. +============================================ + +[![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [![Build Status](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps) + +Our project +----------- +The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform. + + +LipidMaps - Search on LM online with masses. +-------------------------------------------- + +Tool using the [LIPID MAPS Structure Database](http://www.lipidmaps.org/data/structure/index.html) or LMSD, and its Text/Ontology-based search engine. + + +Galaxy +------ +Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. + +Homepage: [https://galaxyproject.org/](https://galaxyproject.org/) + + +Dependencies using Conda +------------------------ +[![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) + + +[Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages. + +``` +#To install miniconda2 +#http://conda.pydata.org/miniconda.html +#To install the tool dependencies using conda: +conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template +#To set an environment: +conda create -n wrapper-bank-massbank-spectrum_search perl-soap-lite perl-list-moreutils perl-json perl-html-template` +#To activate the environment: +. activate wrapper-bank-massbank-spectrum_search +``` + + +Travis +------ +[![Build Status](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps) + +Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes! + +Historic contributors +--------------------- +- Franck Giacomoni @fgiacomoni - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme) +- Marion Landi - [LIFEGRID grant](http://www.lifegrid.fr/fr/home/le-pra-lifegrid.html) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)