Mercurial > repos > fgiacomoni > massbank_ws_searchspectrum
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author | fgiacomoni |
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date | Wed, 19 Apr 2017 11:31:58 -0400 |
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MassBank spectrum searches - Search by pseudo-spectra on a High Quality Mass Spectral Database. =============================================================================================== [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [![Build Status](https://travis-ci.org/workflow4metabolomics/wrapper-bank-massbank-spectrum_search.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/wrapper-bank-massbank-spectrum_search) Our project ----------- The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform. MassBank spectrum searches - Search by pseudo-spectra on a High Quality Mass Spectral Database. ----------------------------------------------------------------------------------------------- Tool using the MassBank API Spectrum Search. Galaxy ------ Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. Homepage: [https://galaxyproject.org/](https://galaxyproject.org/) Dependencies using Conda ------------------------ [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages. ``` #To install miniconda2 #http://conda.pydata.org/miniconda.html #To install the tool dependencies using conda: conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template #To set an environment: conda create -n wrapper-bank-massbank-spectrum_search perl-soap-lite perl-list-moreutils perl-json perl-html-template` #To activate the environment: . activate wrapper-bank-massbank-spectrum_search ``` Travis ------ [![Build Status](https://travis-ci.org/workflow4metabolomics/wrapper-bank-massbank-spectrum_search.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/wrapper-bank-massbank-spectrum_search) Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes! Historic contributors --------------------- - Franck Giacomoni @fgiacomoni - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme) - Marion Landi - [LIFEGRID grant](http://www.lifegrid.fr/fr/home/le-pra-lifegrid.html) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme) - Yann Guitton @yguitton - [LABERCA - Laboratory of Food Contaminants and Residue Analysis](http://www.laberca.org/) - Ecole Nationale Vétérinaire, Agroalimentaire et de l'Alimentation Nantes-Atlantique - France