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1 <?xml version="1.0" ?>
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2 <tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence" version="2019.4">
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3 <description> - Convert to presence/absence</description>
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4 <requirements>
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5 <requirement type="package" version="2019.4">qiime2</requirement>
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6 </requirements>
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7 <command><![CDATA[
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8 qiime feature-table presence-absence
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9
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10 --i-table=$itable
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11
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12 --o-presence-absence-table=opresenceabsencetable
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13 ;
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14 cp opresenceabsencetable.qza $opresenceabsencetable
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15 ]]></command>
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16 <inputs>
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17 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances. [required]" name="itable" optional="False" type="data"/>
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18 </inputs>
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19 <outputs>
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20 <data format="qza" label="${tool.name} on ${on_string}: presenceabsencetable.qza" name="opresenceabsencetable"/>
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21 </outputs>
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22 <help><![CDATA[
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23 Convert to presence/absence
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24 ###########################
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25
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26 Convert frequencies to binary values indicating presence or absence of a
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27 feature in a sample.
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28
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29 Parameters
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30 ----------
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31 table : FeatureTable[Frequency | RelativeFrequency]
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32 The feature table to be converted into presence/absence abundances.
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33
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34 Returns
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35 -------
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36 presence_absence_table : FeatureTable[PresenceAbsence]
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37 The resulting presence/absence feature table.
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38 ]]></help>
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39 <macros>
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40 <import>qiime_citation.xml</import>
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41 </macros>
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42 <expand macro="qiime_citation"/>
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43 </tool>
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