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1 <?xml version="1.0" ?>
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2 <tool id="qiime_feature-classifier_fit-classifier-sklearn" name="qiime feature-classifier fit-classifier-sklearn"
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3 version="2020.8">
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4 <description>Train an almost arbitrary scikit-learn classifier</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime feature-classifier fit-classifier-sklearn
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10
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11 --i-reference-reads=$ireferencereads
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12
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13 --i-reference-taxonomy=$ireferencetaxonomy
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14
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15 #if str($iclassweight) != 'None':
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16 --i-class-weight=$iclassweight
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17 #end if
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18
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19 --p-classifier-specification=$pclassifierspecification
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20
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21 --o-classifier=oclassifier
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22
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23 #if str($examples) != 'None':
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24 --examples=$examples
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25 #end if
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26
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27 ;
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28 cp oclassifier.qza $oclassifier
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29
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30 ]]></command>
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31 <inputs>
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32 <param format="qza,no_unzip.zip" label="--i-reference-reads: ARTIFACT FeatureData[Sequence] [required]" name="ireferencereads" optional="False" type="data" />
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33 <param format="qza,no_unzip.zip" label="--i-reference-taxonomy: ARTIFACT FeatureData[Taxonomy] [required]" name="ireferencetaxonomy" optional="False" type="data" />
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34 <param format="qza,no_unzip.zip" label="--i-class-weight: ARTIFACT FeatureTable[RelativeFrequency] [optional]" name="iclassweight" optional="False" type="data" />
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35 <param label="--p-classifier-specification: TEXT [required]" name="pclassifierspecification" optional="False" type="text" />
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36 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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37
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38 </inputs>
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39
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40 <outputs>
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41 <data format="qza" label="${tool.name} on ${on_string}: classifier.qza" name="oclassifier" />
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42
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43 </outputs>
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44
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45 <help><![CDATA[
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46 Train an almost arbitrary scikit-learn classifier
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47 ###############################################################
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48
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49 Train a scikit-learn classifier to classify reads.
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50
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51 Parameters
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52 ----------
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53 reference_reads : FeatureData[Sequence]
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54 reference_taxonomy : FeatureData[Taxonomy]
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55 classifier_specification : Str
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56 class_weight : FeatureTable[RelativeFrequency], optional
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57
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58 Returns
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59 -------
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60 classifier : TaxonomicClassifier
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61 ]]></help>
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62 <macros>
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63 <import>qiime_citation.xml</import>
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64 </macros>
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65 <expand macro="qiime_citation"/>
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66 </tool> |
