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1 <?xml version="1.0" ?>
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2 <tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence"
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3 version="2020.8">
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4 <description>Convert to presence/absence</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime feature-table presence-absence
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10
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11 #if $itable:
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12 --i-table
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13 #end if
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14
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15 #if $opresenceabsencetable:
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16 --o-presence-absence-table
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17 #end if
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18
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19 #if str($examples) != 'None':
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20 --examples=$examples
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21 #end if
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22
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23 ;
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24 cp omergeddata.qza $omergeddata
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25
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26 ]]></command>
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27 <inputs>
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28 <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances. [required]" name="itable" selected="False" type="boolean" />
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29 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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30
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31 </inputs>
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32
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33 <outputs>
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34 <param label="--o-presence-absence-table: --o-presence-absence-table: ARTIFACT FeatureTable[PresenceAbsence] The resulting presence/absence feature table. [required]" name="opresenceabsencetable" selected="False" type="boolean" />
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35
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36 </outputs>
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37
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38 <help><![CDATA[
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39 Convert to presence/absence
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40 ###############################################################
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41
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42 Convert frequencies to binary values indicating presence or absence of a
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43 feature in a sample.
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44
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45 Parameters
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46 ----------
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47 table : FeatureTable[Frequency | RelativeFrequency]
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48 The feature table to be converted into presence/absence abundances.
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49
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50 Returns
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51 -------
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52 presence_absence_table : FeatureTable[PresenceAbsence]
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53 The resulting presence/absence feature table.
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54 ]]></help>
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55 <macros>
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56 <import>qiime_citation.xml</import>
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57 </macros>
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58 <expand macro="qiime_citation"/>
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59 </tool> |
