Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_feature-classifier_fit-classifier-naive-bayes.xml @ 10:21c7954105a9 draft
Fix
| author | florianbegusch |
|---|---|
| date | Sun, 25 Aug 2019 10:26:27 -0400 |
| parents | f190567fe3f6 |
| children | a0a8d77a991c |
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| 9:f190567fe3f6 | 10:21c7954105a9 |
|---|---|
| 9 | 9 |
| 10 #if str( $id_to_taxonomy_fp.selector ) == 'history' | 10 #if str( $id_to_taxonomy_fp.selector ) == 'history' |
| 11 #set $tax = $id_to_taxonomy_fp.taxonomy_fp | 11 #set $tax = $id_to_taxonomy_fp.taxonomy_fp |
| 12 #else: | 12 #else: |
| 13 #set $tax_path = $id_to_taxonomy_fp.taxonomy_fp.fields.path | 13 #set $tax_path = $id_to_taxonomy_fp.taxonomy_fp.fields.path |
| 14 qiime tools import --type 'FeatureData[Taxonomy]' --source-format HeaderlessTSVTaxonomyFormat --input-path $tax_path --output-path ref-taxonomy.qza; | 14 qiime tools import --type 'FeatureData[Taxonomy]' --input-format HeaderlessTSVTaxonomyFormat --input-path $tax_path --output-path ref-taxonomy.qza; |
| 15 #set $tax='ref-taxonomy.qza' | 15 #set $tax='ref-taxonomy.qza' |
| 16 #end if | 16 #end if |
| 17 | 17 |
| 18 | 18 |
| 19 qiime feature-classifier fit-classifier-naive-bayes | 19 qiime feature-classifier fit-classifier-naive-bayes |