comparison qiime2/qiime_feature-table_merge-seqs.xml @ 0:370e0b6e9826 draft

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0:370e0b6e9826

<?xml version="1.0" ?>
<tool id="qiime_feature-table_merge-seqs" name="qiime feature-table merge-seqs" version="2019.4">
	<description> - Combine collections of feature sequences</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime feature-table merge-seqs

#def list_dict_to_string(list_dict):
	#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
	#for d in list_dict[1:]:
		#set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
	#end for
	#return $file_list
#end def
--i-data=$list_dict_to_string($input_files_idata)


--o-merged-data=omergeddata
;
cp omergeddata.qza $omergeddata
	]]></command>
	<inputs>
		<repeat name="input_files_idata" optional="False" title="--i-data">
			<param format="qza,no_unzip.zip" label="--i-data: PATH List[FeatureData[Sequence]] The collection of feature sequences to be merged.  [required]" name="additional_input" type="data"/>
		</repeat>

	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata"/>
	</outputs>
	<help><![CDATA[
Combine collections of feature sequences
########################################

Combines feature data objects which may or may not contain data for the
same features. If different feature data is present for the same feature id
in the inputs, the data from the first will be propagated to the result.

Parameters
----------
data : List[FeatureData[Sequence]]
    The collection of feature sequences to be merged.

Returns
-------
merged_data : FeatureData[Sequence]
    The resulting collection of feature sequences containing all feature
    sequences provided.
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>