comparison qiime2/qiime_metadata_tabulate.xml @ 0:370e0b6e9826 draft

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0:370e0b6e9826

<?xml version="1.0" ?>
<tool id="qiime_metadata_tabulate" name="qiime metadata tabulate" version="2019.4">
	<description> - Interactively explore Metadata in an HTML table</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime metadata tabulate


#def list_dict_to_string(list_dict):
#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
#for d in list_dict[1:]:
	#set $file_list = $file_list + ' --m-input-file=' + d['additional_input'].__getattr__('file_name')
#end for
#return $file_list
#end def
--m-input-file=$list_dict_to_string($input_files_minputfile)


#if $ppagesize:
 --p-page-size=$ppagesize
#end if

--o-visualization=ovisualization
;
qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization'
	]]></command>
	<inputs>
		<param label="--p-page-size: INTEGER  The maximum number of Metadata records to display per page                               [default: 100]" name="ppagesize" optional="True" type="integer" value="100"/>

		<repeat name="input_files_minputfile" optional="False" title="--m-input-file">
			<param label="--m-input-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. The metadata to tabulate.  [required]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
		</repeat>

	</inputs>
	<outputs>
		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
	</outputs>
	<help><![CDATA[
Interactively explore Metadata in an HTML table
###############################################

Generate a tabular view of Metadata. The output visualization supports
interactive filtering, sorting, and exporting to common file formats.

Parameters
----------
input : Metadata
    The metadata to tabulate.
page_size : Int, optional
    The maximum number of Metadata records to display per page

Returns
-------
visualization : Visualization
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>