Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_phylogeny_midpoint-root.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | f190567fe3f6 |
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-1:000000000000 | 0:370e0b6e9826 |
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1 <?xml version="1.0" ?> | |
2 <tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2019.4"> | |
3 <description> - Midpoint root an unrooted phylogenetic tree.</description> | |
4 <requirements> | |
5 <requirement type="package" version="2019.4">qiime2</requirement> | |
6 </requirements> | |
7 <command><![CDATA[ | |
8 qiime phylogeny midpoint-root | |
9 | |
10 --i-tree=$itree | |
11 | |
12 --o-rooted-tree=orootedtree | |
13 ; | |
14 cp orootedtree.qza $orootedtree | |
15 ]]></command> | |
16 <inputs> | |
17 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data"/> | |
18 </inputs> | |
19 <outputs> | |
20 <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree"/> | |
21 </outputs> | |
22 <help><![CDATA[ | |
23 Midpoint root an unrooted phylogenetic tree. | |
24 ############################################ | |
25 | |
26 Midpoint root an unrooted phylogenetic tree. | |
27 | |
28 Parameters | |
29 ---------- | |
30 tree : Phylogeny[Unrooted] | |
31 The phylogenetic tree to be rooted. | |
32 | |
33 Returns | |
34 ------- | |
35 rooted_tree : Phylogeny[Rooted] | |
36 The rooted phylogenetic tree. | |
37 ]]></help> | |
38 <macros> | |
39 <import>qiime_citation.xml</import> | |
40 </macros> | |
41 <expand macro="qiime_citation"/> | |
42 </tool> |