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comparison qiime2/qiime_diversity_alpha-group-significance.xml @ 2:51025741f326 draft

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Uploaded
author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 370e0b6e9826
children 914fa4daf16a
comparison
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1:255f48db74f8 2:51025741f326
8 qiime diversity alpha-group-significance 8 qiime diversity alpha-group-significance
9 9
10 --i-alpha-diversity=$ialphadiversity 10 --i-alpha-diversity=$ialphadiversity
11 11
12 12
13 #if $input_files_mmetadatafile:
13 #def list_dict_to_string(list_dict): 14 #def list_dict_to_string(list_dict):
14 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 15 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
15 #for d in list_dict[1:]: 16 #for d in list_dict[1:]:
16 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') 17 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
17 #end for 18 #end for
18 #return $file_list 19 #return $file_list
19 #end def 20 #end def
21 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
22 #end if
20 23
21 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
22 24
23 --o-visualization=ovisualization 25 --o-visualization=ovisualization
24 ; 26 ;
25 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' 27 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path'
26 && cp -r out/* '$ovisualization.files_path' 28 && cp -r out/* '$ovisualization.files_path'