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comparison qiime2/qiime_diversity_core-metrics.xml @ 2:51025741f326 draft

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Uploaded
author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 370e0b6e9826
children 914fa4daf16a
comparison
equal deleted inserted replaced
1:255f48db74f8 2:51025741f326
13 #set $pnjobs = '${GALAXY_SLOTS:-4}' 13 #set $pnjobs = '${GALAXY_SLOTS:-4}'
14 #if str($pnjobs): 14 #if str($pnjobs):
15 --p-n-jobs="$pnjobs" 15 --p-n-jobs="$pnjobs"
16 #end if 16 #end if
17 17
18 #if $input_files_mmetadatafile:
18 #def list_dict_to_string(list_dict): 19 #def list_dict_to_string(list_dict):
19 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 20 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
20 #for d in list_dict[1:]: 21 #for d in list_dict[1:]:
21 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name') 22 #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
22 #end for 23 #end for
23 #return $file_list 24 #return $file_list
24 #end def 25 #end def
25 26
26 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile) 27 --m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
27 28 #end if
28 29
29 --o-rarefied-table=orarefiedtable 30 --o-rarefied-table=orarefiedtable
30 --o-observed-otus-vector=oobservedotusvector 31 --o-observed-otus-vector=oobservedotusvector
31 --o-shannon-vector=oshannonvector 32 --o-shannon-vector=oshannonvector
32 --o-evenness-vector=oevennessvector 33 --o-evenness-vector=oevennessvector