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comparison qiime2/qiime_feature-table_merge-taxa.xml @ 2:51025741f326 draft

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Uploaded
author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 370e0b6e9826
children f190567fe3f6
comparison
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1:255f48db74f8 2:51025741f326
5 <requirement type="package" version="2019.4">qiime2</requirement> 5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements> 6 </requirements>
7 <command><![CDATA[ 7 <command><![CDATA[
8 qiime feature-table merge-taxa 8 qiime feature-table merge-taxa
9 9
10
11 #if $input_files_idata:
10 #def list_dict_to_string(list_dict): 12 #def list_dict_to_string(list_dict):
11 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 13 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
12 #for d in list_dict[1:]: 14 #for d in list_dict[1:]:
13 #set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name') 15 #set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
14 #end for 16 #end for
15 #return $file_list 17 #return $file_list
16 #end def 18 #end def
17 --i-data=$list_dict_to_string($input_files_idata) 19 --i-data=$list_dict_to_string($input_files_idata)
20 #end if
18 21
19 22
20 --o-merged-data=omergeddata 23 --o-merged-data=omergeddata
21 ; 24 ;
22 cp omergeddata.qza $omergeddata 25 cp omergeddata.qza $omergeddata