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comparison qiime2/qiime_feature-table_merge.xml @ 2:51025741f326 draft

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author florianbegusch
date Thu, 18 Jul 2019 12:19:15 -0400
parents 370e0b6e9826
children f190567fe3f6
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1:255f48db74f8 2:51025741f326
5 <requirement type="package" version="2019.4">qiime2</requirement> 5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements> 6 </requirements>
7 <command><![CDATA[ 7 <command><![CDATA[
8 qiime feature-table merge 8 qiime feature-table merge
9 9
10 #if $input_files_itables:
10 #def list_dict_to_string(list_dict): 11 #def list_dict_to_string(list_dict):
11 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name') 12 #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
12 #for d in list_dict[1:]: 13 #for d in list_dict[1:]:
13 #set $file_list = $file_list + ' --i-tables=' + d['additional_input'].__getattr__('file_name') 14 #set $file_list = $file_list + ' --i-tables=' + d['additional_input'].__getattr__('file_name')
14 #end for 15 #end for
15 #return $file_list 16 #return $file_list
16 #end def 17 #end def
17 --i-tables=$list_dict_to_string($input_files_itables) 18 --i-tables=$list_dict_to_string($input_files_itables)
19 #end if
18 20
19 21
20 #if str($poverlapmethod) != 'None': 22 #if str($poverlapmethod) != 'None':
21 --p-overlap-method=$poverlapmethod 23 --p-overlap-method=$poverlapmethod
22 #end if 24 #end if