Mercurial > repos > florianbegusch > qiime2_suite

comparison qiime2/qiime_cutadapt_trim-single.xml @ 4:914fa4daf16a draft

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Fixes
author florianbegusch
date Wed, 31 Jul 2019 03:06:00 -0400
parents 370e0b6e9826
children a025a4a89e07
comparison
equal deleted inserted replaced
3:558645416841 4:914fa4daf16a
11 #set $pcores = '${GALAXY_SLOTS:-4}' 11 #set $pcores = '${GALAXY_SLOTS:-4}'
12 #if str($pcores): 12 #if str($pcores):
13 --p-cores=$pcores 13 --p-cores=$pcores
14 #end if 14 #end if
15 15
16
17 #if '__sq__' in str($padapter):
18 #set $padapter_temp = $padapter.replace('__sq__', "'")
19 #set $padapter = $padapter_temp
20 #end if
21
22 #if 'X' in str($padapter):
23 #set $padapter_temp = $padapter.replace('X', "$")
24 #set $padapter = $padapter_temp
25 #end if
26
16 #if str($padapter): 27 #if str($padapter):
17 --p-adapter="$padapter" 28 --p-adapter="$padapter"
29 #end if
30
31
32
33
34
35 #if '__sq__' in str($pfront):
36 #set $pfront_temp = $pfront.replace('__sq__', "'")
37 #set $pfront = $pfront_temp
18 #end if 38 #end if
19 39
20 #if str($pfront): 40 #if str($pfront):
21 --p-front="$pfront" 41 --p-front="$pfront"
22 #end if 42 #end if
43
44
45
46
23 47
24 #if '__sq__' in str($panywhere): 48 #if '__sq__' in str($panywhere):
25 #set $panywhere_temp = $panywhere.replace('__sq__', "'") 49 #set $panywhere_temp = $panywhere.replace('__sq__', "'")
26 #set $panywhere = $panywhere_temp 50 #set $panywhere = $panywhere_temp
27 #end if 51 #end if
28 52
29 #if str($panywhere): 53 #if str($panywhere):
30 --p-anywhere="$panywhere" 54 --p-anywhere="$panywhere"
31 #end if 55 #end if
56
57
32 58
33 59
34 #if $perrorrate: 60 #if $perrorrate:
35 --p-error-rate=$perrorrate 61 --p-error-rate=$perrorrate
36 #end if 62 #end if