comparison qiime2/qiime_diversity_adonis.xml @ 4:914fa4daf16a draft

Fixes

3:558645416841

#if $input_files_mmetadatafile:
#def list_dict_to_string(list_dict):
  #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
  #for d in list_dict[1:]:
	  #set $file_list = $file_list + ',' + d['additional_input'].__getattr__('file_name')
  #end for
  #return $file_list
#end def
--m-metadata-file=$list_dict_to_string("$input_files_mmetadatafile")
#end if


--p-formula="$pformula"

#if $ppermutations:
 --p-permutations=$ppermutations
#end if

	<inputs>
		<param format="qza,no_unzip.zip" label="--i-distance-matrix: ARTIFACT DistanceMatrix     Matrix of distances between pairs of samples. [required]" name="idistancematrix" optional="False" type="data"/>
		<param label="--p-formula: TEXT     Model formula containing only independent terms contained in the sample metadata. These can be continuous variables or factors, and they can have interactions as in a typical R formula. E.g., the formula 'treatment+block' would test whether the input distance matrix partitions based on 'treatment' and 'block' sample metadata. The formula 'treatment*block' would test both of those effects as well as their interaction. Enclose formulae in quotes to avoid unpleasant surprises.                        [required]" name="pformula" optional="False" type="text"/>
		<param label="--p-permutations: INTEGER Range(1, None)     The number of permutations to be run when computing p-values.                                [default: 999]" name="ppermutations" optional="True" min="1" type="integer" value="999"/>

		<repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file">
			<param format="tabular" label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [required]" name="additional_input" type="data"/>
		</repeat>
	</inputs>
	<outputs>
		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>

4:914fa4daf16a

#if $input_files_mmetadatafile:
#def list_dict_to_string(list_dict):
  #set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
  #for d in list_dict[1:]:
	  #set $file_list = $file_list + ' --m-metadata-file=' + d['additional_input'].__getattr__('file_name')
  #end for
  #return $file_list
#end def
--m-metadata-file=$list_dict_to_string($input_files_mmetadatafile)
#end if



#if '__sq__' in str($pformula):
  #set $pformula_temp = $pformula.replace('__sq__', "'")
  #set $pformula = $pformula_temp
#end if

--p-formula="$pformula"



#if $ppermutations:
 --p-permutations=$ppermutations
#end if

	<inputs>
		<param format="qza,no_unzip.zip" label="--i-distance-matrix: ARTIFACT DistanceMatrix     Matrix of distances between pairs of samples. [required]" name="idistancematrix" optional="False" type="data"/>
		<param label="--p-formula: TEXT     Model formula containing only independent terms contained in the sample metadata. These can be continuous variables or factors, and they can have interactions as in a typical R formula. E.g., the formula 'treatment+block' would test whether the input distance matrix partitions based on 'treatment' and 'block' sample metadata. The formula 'treatment*block' would test both of those effects as well as their interaction. Enclose formulae in quotes to avoid unpleasant surprises.                        [required]" name="pformula" optional="False" type="text"/>
		<param label="--p-permutations: INTEGER Range(1, None)     The number of permutations to be run when computing p-values.                                [default: 999]" name="ppermutations" optional="True" min="1" type="integer" value="999"/>

		<repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file  [required]">
			<param format="tabular" label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [required]" name="additional_input" type="data"/>
		</repeat>
	</inputs>
	<outputs>
		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>