Mercurial > repos > florianbegusch > qiime2_suite

comparison qiime2/qiime_feature-table_transpose.xml @ 14:a0a8d77a991c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author florianbegusch
date Thu, 03 Sep 2020 09:51:29 +0000
parents f190567fe3f6
children
comparison
equal deleted inserted replaced
13:887cd4ad8e16 14:a0a8d77a991c
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <tool id="qiime_feature-table_transpose" name="qiime feature-table transpose" version="2019.7"> 2 <tool id="qiime_feature-table_transpose" name="qiime feature-table transpose"
3 <description> - Transpose a feature table.</description> 3 version="2020.8">
4 <requirements> 4 <description>Transpose a feature table.</description>
5 <requirement type="package" version="2019.7">qiime2</requirement> 5 <requirements>
6 </requirements> 6 <requirement type="package" version="2020.8">qiime2</requirement>
7 <command><![CDATA[ 7 </requirements>
8 <command><![CDATA[
8 qiime feature-table transpose 9 qiime feature-table transpose
9 10
10 --i-table=$itable 11 --i-table=$itable
11 12
12 --o-transposed-feature-table=otransposedfeaturetable 13 --o-transposed-feature-table=otransposedfeaturetable
14
15 #if str($examples) != 'None':
16 --examples=$examples
17 #end if
18
13 ; 19 ;
14 cp otransposedfeaturetable.qza $otransposedfeaturetable 20 cp otransposedfeaturetable.qza $otransposedfeaturetable
15 ]]></command> 21
16 <inputs> 22 ]]></command>
17 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be transposed. [required]" name="itable" optional="False" type="data"/> 23 <inputs>
18 </inputs> 24 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] The feature table to be transposed. [required]" name="itable" optional="False" type="data" />
19 <outputs> 25 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
20 <data format="qza" label="${tool.name} on ${on_string}: transposedfeaturetable.qza" name="otransposedfeaturetable"/> 26
21 </outputs> 27 </inputs>
22 <help><![CDATA[ 28
29 <outputs>
30 <data format="qza" label="${tool.name} on ${on_string}: transposedfeaturetable.qza" name="otransposedfeaturetable" />
31
32 </outputs>
33
34 <help><![CDATA[
23 Transpose a feature table. 35 Transpose a feature table.
24 ########################## 36 ###############################################################
25 37
26 Transpose the rows and columns (typically samples and features) of a 38 Transpose the rows and columns (typically samples and features) of a
27 feature table. 39 feature table.
28 40
29 Parameters 41 Parameters
33 45
34 Returns 46 Returns
35 ------- 47 -------
36 transposed_feature_table : FeatureTable[Frequency] 48 transposed_feature_table : FeatureTable[Frequency]
37 The resulting transposed feature table. 49 The resulting transposed feature table.
38 ]]></help> 50 ]]></help>
39 <macros> 51 <macros>
40 <import>qiime_citation.xml</import> 52 <import>qiime_citation.xml</import>
41 </macros> 53 </macros>
42 <expand macro="qiime_citation"/> 54 <expand macro="qiime_citation"/>
43 </tool> 55 </tool>