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comparison qiime2/qiime_phylogeny_midpoint-root.xml @ 14:a0a8d77a991c draft

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author florianbegusch
date Thu, 03 Sep 2020 09:51:29 +0000
parents f190567fe3f6
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13:887cd4ad8e16 14:a0a8d77a991c
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2019.7"> 2 <tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root"
3 <description> - Midpoint root an unrooted phylogenetic tree.</description> 3 version="2020.8">
4 <requirements> 4 <description>Midpoint root an unrooted phylogenetic tree.</description>
5 <requirement type="package" version="2019.7">qiime2</requirement> 5 <requirements>
6 </requirements> 6 <requirement type="package" version="2020.8">qiime2</requirement>
7 <command><![CDATA[ 7 </requirements>
8 <command><![CDATA[
8 qiime phylogeny midpoint-root 9 qiime phylogeny midpoint-root
9 10
10 --i-tree=$itree 11 --i-tree=$itree
11 12
12 --o-rooted-tree=orootedtree 13 --o-rooted-tree=orootedtree
14
15 #if str($examples) != 'None':
16 --examples=$examples
17 #end if
18
13 ; 19 ;
14 cp orootedtree.qza $orootedtree 20 cp orootedtree.qza $orootedtree
15 ]]></command> 21
16 <inputs> 22 ]]></command>
17 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data"/> 23 <inputs>
18 </inputs> 24 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data" />
19 <outputs> 25 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
20 <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree"/> 26
21 </outputs> 27 </inputs>
22 <help><![CDATA[ 28
29 <outputs>
30 <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree" />
31
32 </outputs>
33
34 <help><![CDATA[
23 Midpoint root an unrooted phylogenetic tree. 35 Midpoint root an unrooted phylogenetic tree.
24 ############################################ 36 ###############################################################
25 37
26 Midpoint root an unrooted phylogenetic tree. 38 Midpoint root an unrooted phylogenetic tree.
27 39
28 Parameters 40 Parameters
29 ---------- 41 ----------
32 44
33 Returns 45 Returns
34 ------- 46 -------
35 rooted_tree : Phylogeny[Rooted] 47 rooted_tree : Phylogeny[Rooted]
36 The rooted phylogenetic tree. 48 The rooted phylogenetic tree.
37 ]]></help> 49 ]]></help>
38 <macros> 50 <macros>
39 <import>qiime_citation.xml</import> 51 <import>qiime_citation.xml</import>
40 </macros> 52 </macros>
41 <expand macro="qiime_citation"/> 53 <expand macro="qiime_citation"/>
42 </tool> 54 </tool>