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comparison qiime2/qiime_sample-classifier_summarize.xml @ 14:a0a8d77a991c draft

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author florianbegusch
date Thu, 03 Sep 2020 09:51:29 +0000
parents f190567fe3f6
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13:887cd4ad8e16 14:a0a8d77a991c
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize" version="2019.7"> 2 <tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize"
3 <description> - Summarize parameter and feature extraction information for a trained estimator.</description> 3 version="2020.8">
4 <requirements> 4 <description>Summarize parameter and feature extraction information for a trained estimator.</description>
5 <requirement type="package" version="2019.7">qiime2</requirement> 5 <requirements>
6 </requirements> 6 <requirement type="package" version="2020.8">qiime2</requirement>
7 <command><![CDATA[ 7 </requirements>
8 qiime sample-classifier summarize 8 <command><![CDATA[
9 qiime sample-classifier summarize
9 10
10 --i-sample-estimator=$isampleestimator 11 --i-sample-estimator=$isampleestimator
11 12
12 --o-visualization=ovisualization 13 --o-visualization=ovisualization
14
15 #if str($examples) != 'None':
16 --examples=$examples
17 #end if
18
13 ; 19 ;
14 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' 20 cp otesttable.qza $otesttable
21
22 ;
23 qiime tools export ovisualization.qzv --output-path out
24 && mkdir -p '$ovisualization.files_path'
15 && cp -r out/* '$ovisualization.files_path' 25 && cp -r out/* '$ovisualization.files_path'
16 && mv '$ovisualization.files_path/index.html' '$ovisualization' 26 && mv '$ovisualization.files_path/index.html' '$ovisualization'
17 ]]></command> 27
18 <inputs> 28 ]]></command>
19 <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor. [required]" name="isampleestimator" optional="False" type="data"/> 29 <inputs>
20 </inputs> 30 <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor. [required]" name="isampleestimator" optional="False" type="data" />
21 <outputs> 31 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
22 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> 32
23 </outputs> 33 </inputs>
24 <help><![CDATA[ 34
35 <outputs>
36 <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
37
38 </outputs>
39
40 <help><![CDATA[
25 Summarize parameter and feature extraction information for a trained estimator. 41 Summarize parameter and feature extraction information for a trained estimator.
26 ############################################################################### 42 ###############################################################
43
27 44
28 Summarize parameter and feature extraction information for a trained 45 Summarize parameter and feature extraction information for a trained
29 estimator. 46 estimator.
30 47
31 Parameters 48 Parameters
34 Sample estimator trained with fit_classifier or fit_regressor. 51 Sample estimator trained with fit_classifier or fit_regressor.
35 52
36 Returns 53 Returns
37 ------- 54 -------
38 visualization : Visualization 55 visualization : Visualization
39 ]]></help> 56 ]]></help>
40 <macros> 57 <macros>
41 <import>qiime_citation.xml</import> 58 <import>qiime_citation.xml</import>
42 </macros> 59 </macros>
43 <expand macro="qiime_citation"/> 60 <expand macro="qiime_citation"/>
44 </tool> 61 </tool>