comparison qiime2-2020.8/qiime_diversity-lib_pielou-evenness.xml @ 20:d93d8888f0b0 draft

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20:d93d8888f0b0

<?xml version="1.0" ?>
<tool id="qiime_diversity-lib_pielou-evenness" name="qiime diversity-lib pielou-evenness"
      version="2020.8">
  <description>Pielou\'s Evenness</description>
  <requirements>
    <requirement type="package" version="2020.8">qiime2</requirement>
  </requirements>
  <command><![CDATA[
qiime diversity-lib pielou-evenness

--i-table=$itable

#if $pdropundefinedsamples:
 --p-drop-undefined-samples
#end if

--o-vector=ovector

#if str($examples) != 'None':
--examples=$examples
#end if

;
cp ovector.qza $ovector

  ]]></command>
  <inputs>
    <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table containing the samples for which Pielou\'s evenness should be computed.        [required]" name="itable" optional="False" type="data" />
    <param label="--p-drop-undefined-samples: --p-drop-undefined-samples: / --p-no-drop-undefined-samples Samples with fewer than two observed features produce undefined (NaN) values. If true, these samples are dropped from the output vector.        [default: False]" name="pdropundefinedsamples" selected="False" type="boolean" />
    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
    
  </inputs>

  <outputs>
    <data format="qza" label="${tool.name} on ${on_string}: vector.qza" name="ovector" />
    
  </outputs>

  <help><![CDATA[
Pielou\'s Evenness
###############################################################

Compute Pielou's Evenness for each sample in a feature table

Parameters
----------
table : FeatureTable[Frequency | RelativeFrequency]
    The feature table containing the samples for which Pielou's evenness
    should be computed.
drop_undefined_samples : Bool, optional
    Samples with fewer than two observed features produce undefined (NaN)
    values. If true, these samples are dropped from the output vector.

Returns
-------
vector : SampleData[AlphaDiversity]
    Vector containing per-sample values for Pielou's Evenness.
  ]]></help>
  <macros>
    <import>qiime_citation.xml</import>
  </macros>
  <expand macro="qiime_citation"/>
</tool>