comparison qiime2/qiime_longitudinal_first-differences.xml @ 6:de4c22a52df4 draft

Fixes

5:a025a4a89e07

	</requirements>
	<command><![CDATA[
qiime longitudinal first-differences

--p-state-column="$pstatecolumn"
--p-individual-id-column="$pindividualidcolumn"
--p-metric="$pmetric"

#if str($itable) != 'None':
 --i-table=$itable
#end if

			<option value="random">random</option>
			<option value="drop">drop</option>
		</param>
		<param label="--p-baseline: NUMBER    A value listed in the state-column metadata column against which all other states should be compared. Toggles calculation of static differences instead of first differences (which are calculated if no value is given for baseline). If a 'baseline' value is provided, sample differences at each state are compared against the baseline state, instead of the previous state. Must be a value listed in the state-column.                              [optional]" name="pbaseline" optional="True" type="float"/>

		<repeat name="input_files_mmetadatafile" optional="True" title="--m-metadata-file  [required]">
			<param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
		</repeat>

	</inputs>
	<outputs>

6:de4c22a52df4

	</requirements>
	<command><![CDATA[
qiime longitudinal first-differences

--p-state-column="$pstatecolumn"
--p-metric="$pmetric"



#if '__pd__' in str($pindividualidcolumn):
	#set $pwhere_temp = $pindividualidcolumn.replace('__pd__', "#")
	#set $pindividualidcolumn = $pwhere_temp
#end if
--p-individual-id-column="$pindividualidcolumn"



#if str($itable) != 'None':
 --i-table=$itable
#end if

			<option value="random">random</option>
			<option value="drop">drop</option>
		</param>
		<param label="--p-baseline: NUMBER    A value listed in the state-column metadata column against which all other states should be compared. Toggles calculation of static differences instead of first differences (which are calculated if no value is given for baseline). If a 'baseline' value is provided, sample differences at each state are compared against the baseline state, instead of the previous state. Must be a value listed in the state-column.                              [optional]" name="pbaseline" optional="True" type="float"/>

		<repeat name="input_files_mmetadatafile" optional="False" title="--m-metadata-file  [required]">
			<param label="--m-metadata-file: Metadata file or artifact viewable as metadata. This option may be supplied multiple times to merge metadata. [optional]" name="additional_input" type="data" format="tabular,qza,no_unzip.zip" />
		</repeat>

	</inputs>
	<outputs>