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comparison qiime2/qiime_quality-filter_q-score.xml @ 6:de4c22a52df4 draft

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Fixes
author florianbegusch
date Tue, 13 Aug 2019 07:46:48 -0400
parents 370e0b6e9826
children f190567fe3f6
comparison
equal deleted inserted replaced
5:a025a4a89e07 6:de4c22a52df4
7 <command><![CDATA[ 7 <command><![CDATA[
8 qiime quality-filter q-score 8 qiime quality-filter q-score
9 9
10 --i-demux=$idemux 10 --i-demux=$idemux
11 11
12 #if $pminquality: 12 #if str($pminquality):
13 --p-min-quality=$pminquality 13 --p-min-quality=$pminquality
14 #end if 14 #end if
15 15
16 #if $pqualitywindow: 16 #if str($pqualitywindow):
17 --p-quality-window=$pqualitywindow 17 --p-quality-window=$pqualitywindow
18 #end if 18 #end if
19 19
20 #if $pminlengthfraction: 20 #if str($pminlengthfraction):
21 --p-min-length-fraction=$pminlengthfraction 21 --p-min-length-fraction=$pminlengthfraction
22 #end if 22 #end if
23 23
24 #if $pmaxambiguous: 24 #if str($pmaxambiguous):
25 --p-max-ambiguous=$pmaxambiguous 25 --p-max-ambiguous=$pmaxambiguous
26 #end if 26 #end if
27 27
28 --o-filtered-sequences=ofilteredsequences 28 --o-filtered-sequences=ofilteredsequences
29 --o-filter-stats=ofilterstats 29 --o-filter-stats=ofilterstats