Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_taxa_filter-table.xml @ 6:de4c22a52df4 draft
Fixes
author | florianbegusch |
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date | Tue, 13 Aug 2019 07:46:48 -0400 |
parents | a025a4a89e07 |
children | f190567fe3f6 |
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5:a025a4a89e07 | 6:de4c22a52df4 |
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4 <requirements> | 4 <requirements> |
5 <requirement type="package" version="2019.4">qiime2</requirement> | 5 <requirement type="package" version="2019.4">qiime2</requirement> |
6 </requirements> | 6 </requirements> |
7 <command><![CDATA[ | 7 <command><![CDATA[ |
8 qiime taxa filter-table | 8 qiime taxa filter-table |
9 | |
10 --i-table=$itable | |
11 | 9 |
12 | 10 |
13 #if str( $id_to_taxonomy_fp.selector ) == 'history' | 11 #if str( $id_to_taxonomy_fp.selector ) == 'history' |
14 #set $tax = $id_to_taxonomy_fp.taxonomy_fp | 12 #set $tax = $id_to_taxonomy_fp.taxonomy_fp |
15 --i-taxonomy '$tax' | 13 --i-taxonomy '$tax' |
16 #else: | 14 #else: |
17 #set $tax = $id_to_taxonomy_fp.taxonomy_fp.fields.path | 15 #set $tax = $id_to_taxonomy_fp.taxonomy_fp.fields.path |
18 --i-taxonomy '$tax' | 16 --i-taxonomy '$tax' |
19 #end if | 17 #end if |
20 | 18 |
19 | |
20 --i-table=$itable | |
21 | 21 |
22 #if str($pinclude): | 22 #if str($pinclude): |
23 --p-include="$pinclude" | 23 --p-include="$pinclude" |
24 #end if | 24 #end if |
25 | 25 |