Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_demux_subsample-paired.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | f190567fe3f6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_demux_subsample-paired.xml Wed Jul 17 03:05:17 2019 -0400 @@ -0,0 +1,50 @@ +<?xml version="1.0" ?> +<tool id="qiime_demux_subsample-paired" name="qiime demux subsample-paired" version="2019.4"> + <description> - Subsample paired-end sequences without replacement.</description> + <requirements> + <requirement type="package" version="2019.4">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime demux subsample-paired + +--i-sequences=$isequences +--p-fraction="$pfraction" + +--o-subsampled-sequences=osubsampledsequences +; +cp osubsampledsequences.qza $osubsampledsequences + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-sequences: ARTIFACT SampleData[PairedEndSequencesWithQuality] The demultiplexed sequences to be subsampled. [required]" name="isequences" optional="False" type="data"/> + <param label="--p-fraction: PROPORTION Range(0, 1, inclusive_start=False) The fraction of sequences to retain in subsample. [required]" name="pfraction" optional="False" exclude_min="True" min="0" max="1" value="" type="float"/> + </inputs> + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: subsampledsequences.qza" name="osubsampledsequences"/> + </outputs> + <help><![CDATA[ +Subsample paired-end sequences without replacement. +################################################### + +Generate a random subsample of paired-end sequences containing +approximately the fraction of input sequences specified by the fraction +parameter. The number of output samples will always be equal to the number +of input samples, even if some of those samples contain no sequences after +subsampling. + +Parameters +---------- +sequences : SampleData[PairedEndSequencesWithQuality] + The demultiplexed sequences to be subsampled. +fraction : Float % Range(0, 1, inclusive_start=False) + The fraction of sequences to retain in subsample. + +Returns +------- +subsampled_sequences : SampleData[PairedEndSequencesWithQuality] + The subsampled sequences. + ]]></help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation"/> +</tool>