diff qiime2/qiime_diversity_pcoa-biplot.xml @ 0:370e0b6e9826 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_diversity_pcoa-biplot.xml	Wed Jul 17 03:05:17 2019 -0400
@@ -0,0 +1,49 @@
+<?xml version="1.0" ?>
+<tool id="qiime_diversity_pcoa-biplot" name="qiime diversity pcoa-biplot" version="2019.4">
+	<description> - Principal Coordinate Analysis Biplot</description>
+	<requirements>
+		<requirement type="package" version="2019.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+qiime diversity pcoa-biplot
+
+--i-pcoa=$ipcoa
+--i-features=$ifeatures
+
+--o-biplot=obiplot
+;
+cp obiplot.qza $obiplot
+	]]></command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-pcoa: ARTIFACT      The PCoA where the features will be projected onto. PCoAResults                                                     [required]" name="ipcoa" optional="False" type="data"/>
+		<param format="qza,no_unzip.zip" label="--i-features: ARTIFACT FeatureTable[RelativeFrequency] Variables to project onto the PCoA matrix  [required]" name="ifeatures" optional="False" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="qza" label="${tool.name} on ${on_string}: biplot.qza" name="obiplot"/>
+	</outputs>
+	<help><![CDATA[
+Principal Coordinate Analysis Biplot
+####################################
+
+Project features into a principal coordinates matrix. The features used
+should be the features used to compute the distance matrix. It is
+recommended that these variables be normalized in cases of dimensionally
+heterogeneous physical variables.
+
+Parameters
+----------
+pcoa : PCoAResults
+    The PCoA where the features will be projected onto.
+features : FeatureTable[RelativeFrequency]
+    Variables to project onto the PCoA matrix
+
+Returns
+-------
+biplot : PCoAResults % Properties('biplot')
+    The resulting PCoA matrix.
+	]]></help>
+<macros>
+    <import>qiime_citation.xml</import>
+</macros>
+<expand macro="qiime_citation"/>
+</tool>