diff qiime2/qiime_feature-table_merge-taxa.xml @ 0:370e0b6e9826 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_feature-table_merge-taxa.xml	Wed Jul 17 03:05:17 2019 -0400
@@ -0,0 +1,56 @@
+<?xml version="1.0" ?>
+<tool id="qiime_feature-table_merge-taxa" name="qiime feature-table merge-taxa" version="2019.4">
+	<description> - Combine collections of feature taxonomies</description>
+	<requirements>
+		<requirement type="package" version="2019.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+qiime feature-table merge-taxa
+
+#def list_dict_to_string(list_dict):
+	#set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
+	#for d in list_dict[1:]:
+		#set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
+	#end for
+	#return $file_list
+#end def
+ --i-data=$list_dict_to_string($input_files_idata)
+
+
+--o-merged-data=omergeddata
+;
+cp omergeddata.qza $omergeddata
+	]]></command>
+	<inputs>
+		<repeat name="input_files_idata" optional="False" title="--i-data">
+			<param format="qza,no_unzip.zip" label="--i-data: PATH List[FeatureData[Taxonomy]] The collection of feature taxonomies to be merged.  [required]" name="additional_input" type="data"/>
+		</repeat>
+	</inputs>
+	<outputs>
+		<data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata"/>
+	</outputs>
+	<help><![CDATA[
+Combine collections of feature taxonomies
+#########################################
+
+Combines a pair of feature data objects which may or may not contain data
+for the same features. If different feature data is present for the same
+feature id in the inputs, the data from the first will be propagated to the
+result.
+
+Parameters
+----------
+data : List[FeatureData[Taxonomy]]
+    The collection of feature taxonomies to be merged.
+
+Returns
+-------
+merged_data : FeatureData[Taxonomy]
+    The resulting collection of feature taxonomies containing all feature
+    taxonomies provided.
+	]]></help>
+<macros>
+    <import>qiime_citation.xml</import>
+</macros>
+<expand macro="qiime_citation"/>
+</tool>