diff qiime2/qiime_feature-table_presence-absence.xml @ 0:370e0b6e9826 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_feature-table_presence-absence.xml	Wed Jul 17 03:05:17 2019 -0400
@@ -0,0 +1,43 @@
+<?xml version="1.0" ?>
+<tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence" version="2019.4">
+	<description> - Convert to presence/absence</description>
+	<requirements>
+		<requirement type="package" version="2019.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+qiime feature-table presence-absence
+
+--i-table=$itable
+
+--o-presence-absence-table=opresenceabsencetable
+;
+cp opresenceabsencetable.qza $opresenceabsencetable
+	]]></command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances.                 [required]" name="itable" optional="False" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="qza" label="${tool.name} on ${on_string}: presenceabsencetable.qza" name="opresenceabsencetable"/>
+	</outputs>
+	<help><![CDATA[
+Convert to presence/absence
+###########################
+
+Convert frequencies to binary values indicating presence or absence of a
+feature in a sample.
+
+Parameters
+----------
+table : FeatureTable[Frequency | RelativeFrequency]
+    The feature table to be converted into presence/absence abundances.
+
+Returns
+-------
+presence_absence_table : FeatureTable[PresenceAbsence]
+    The resulting presence/absence feature table.
+	]]></help>
+<macros>
+    <import>qiime_citation.xml</import>
+</macros>
+<expand macro="qiime_citation"/>
+</tool>